IonExplorer: An online resource and webtool to interact with ionomic data from the leaves and seeds of over 1000 Arabidopsis thaliana accessions.





Map of the data

Map to displays the samples for each datasets.


As the map can get cluttered you can only plot either the leaf or seed data from each datasets at any one time. Please select the data you would like to plot:

Dataset 1:

Dataset 2:






Dataset 1:

1,135 Arabidopsis thaliana accessions


Select the ions that you want to display in the datatable and in the graphs:


Dataset 1: Data Table:
Download Data

Dataset 2:

User uploaded data


If you want you can upload a second dataset to compare against, this dataset must include the columns Accession_ID,Name,Country,Latitude,Longitude,CS_number and must be formated as either .csv, .tsv, .xls or .xlsx

Select the ions that you want to display in the datatable and in the graphs:




Dataset2: Data Table:
Download Data

Graphs


Based on your selection the following graphs are available for interrogation



This heatmaps show the Pearsons correlation in ion expression for each tissue based on the filtered data.

Facet the data by


Radar plot to compare the normalized z-score of the selected data against the col-0 samples.


PCA plots to show how each ion contributes to the overall distribution (PC1 vs PC2) of the filtered data.

Facet the data by

Plot type:


Bar plots to displays the number of samples per tissue for each datasets, stratified by country.

Facet the data by