IonExplorer: An online resource and webtool to interact with ionomic data from the leaves and seeds of over 1000 Arabidopsis thaliana accessions.
Map of the data
Map to displays the samples for each datasets.
As the map can get cluttered you can only plot either the leaf or seed data from each datasets at any one time. Please select the data you would like to plot:
Dataset 1:
Dataset 2:
Dataset 1:
1,135 Arabidopsis thaliana accessions
Select the ions that you want to display in the datatable and in the graphs:
Dataset 2:
User uploaded data
If you want you can upload a second dataset to compare against, this dataset must include the columns Accession_ID,Name,Country,Latitude,Longitude,CS_number and must be formated as either .csv, .tsv, .xls or .xlsx
Select the ions that you want to display in the datatable and in the graphs:
Graphs
Based on your selection the following graphs are available for interrogation
This heatmaps show the Pearsons correlation in ion expression for each tissue based on the filtered data.
Facet the data by
Radar plot to compare the normalized z-score of the selected data against the col-0 samples.
PCA plots to show how each ion contributes to the overall distribution (PC1 vs PC2) of the filtered data.
Facet the data by
Plot type:
Bar plots to displays the number of samples per tissue for each datasets, stratified by country.